Image Computation for Microscopy
Microscope image processing deals with the acquisition, enhancement, visualization and analysis of images generated by a wide variety of microscope technologies. Microscopy is used in manufacturing, life sciences, geosciences, materials sciences and more. Automated and interactive processing of microscope data can lead to more vivid and informative images and yields quantitative measurements. The Wolfram Language provides extensive support for acquiring and accessing microscope data and metadata, as well as a comprehensive suite of functionality to enhance images, reconstruct 3D objects and analyze microscopy images via segmentation, measurements, statistical models and neural networks for recognition.
Image Acquisition »
Import — import data and metadata from standard formats (TIFF, OME-TIFF, DICOM, ...) and proprietary formats (Leica, Zeiss, Olympus, ...) through BioFormatsLink
CurrentImage — capture an image or video in real time from a microscope camera
ImageAlign — align images from a stack or grid of images
Image3D ▪ ImageFocusCombine ▪ FindGeometricTransform
Brightness & Color Enhancement »
BrightnessEqualize — correct uneven brightness
ImageAdjust ▪ HistogramTransform ▪ ...
Denoising and Image Restoration »
ImageDeconvolve — remove blur induced by a point spread function (PSF)
MeanFilter ▪ TotalVariationFilter ▪ CurvatureFlowFilter ▪ Inpaint ▪ ...
Image Properties »
ImageMeasurements — measure shape and color properties of an image
ImageHistogram ▪ Image3DProjection ▪ Image3DSlices ▪ ...
Segmentation Analysis »
Binarize — segmentation by thresholding pixel intensities
ClusteringComponents — segmentation based on cluster analysis (-means, etc.)
ComponentMeasurements ▪ SelectComponents ▪ DeleteSmallComponents ▪ ...
Feature Extraction & Tracking »
ImageDisplacements — dense tracking of pixels across a sequence of images
ImageFeatureTrack ▪ ImageKeypoints ▪ ImageCorrespondingPoints ▪ ...
Classification & Feature Detection »
Classify — categorize images or components
FeatureExtract ▪ FeatureSpacePlot ▪ FindClusters ▪ ...
NetGraph ▪ NetChain ▪ NetTrain ▪ NetModel ▪ NetEncoder ▪ ...
DynamicImage — explore an image by zooming and panning
HighlightImage ▪ Colorize ▪ ListAnimate ▪ ListContourPlot3D ▪ ...